Integrated Web-based Single-cell Transcriptome Atlas of the Skin

Start by selecting specific single-cell RNA-sequencing dataset below. Note that in all datasets only significantly expressed genes are searchable.


Mouse Embryonic Skin

Day E13.5

From: Single-Cell Analysis Reveals a Hair Follicle Dermal Niche Molecular Differentiation Trajectory that Begins Prior to Morphogenesis Developmental Cell 2019

Mouse Embryonic Skin

Day E14.5

From: Single-Cell Analysis Reveals a Hair Follicle Dermal Niche Molecular Differentiation Trajectory that Begins Prior to Morphogenesis Developmental Cell 2019

Mouse Epidermis

Newborn

From: Murine interfollicular epidermal differentiation is gradualistic with GRHL3 controlling progression from stem to transition cell states Nature Communications 2021

Mouse Skin, telogen phase

Postnatal day 49

From: Defining epidermal Basal Cell States During Sking Homeostasis and Wound Healing Using Single-Cell Transcriptomics Cell Reports 2020

Mouse Skin Wound

Day 4 post wounding

From: Defining epidermal Basal Cell States During Sking Homeostasis and Wound Healing Using Single-Cell Transcriptomics Cell Reports 2020

Mouse Skin Wound

Day 12 post wounding

From: Single-cell analysis reveals fibroblast heterogeneity and myeloid-derived adipocyte progenitors in murine skin wounds. Nature Communications 2019

Mouse Skin Wound

Day 18 post-wounding

From: Phagocytosis of Wnt inhibitor SFRP4 by late wound macrophages drives chronic Wnt activity forfibrotic skin healing Science Advances 2020

Human Hair Follicle

Scalp skin minigrafts, anagen

From: Defining Transcriptional Signatures of Human Hair Follicle Cell State.
J Invest Dermatol 2019

Human skin (Hip, Palm and Sole)

All

From:

Human skin (Hip, Palm and Sole)

Keratnocytes

From:

Human skin (Hip, Palm and Sole)

Fibroblasts

From:

Mouse Skin Wound

Epithelial, Fibroblast, Immune cell

Unwounded vs Day 4 and Day 7 post wounding

From: Wound healing in aged skin exhibits systems-level alterations in cellular composition and cell-cell communication
Cell Report 2022